“--with-x=yes (default) and X11 headers/libs are not available” Announcing the arrival of Valued Associate #679: Cesar Manara Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern) 2019 Community Moderator Election Results Why I closed the “Why is Kali so hard” questionError in installing R package headers/libs are not availableAlsa - how can i tell my default audio output is card 2 and device 0, not hdmi?install and run new version of RWhy apache binaries built with gcc 64-bits are mixed 32 and 64 bits?Compile static tmux with libutempter supportFresh build and install of bison with custom --prefix is not looking for its data where I expecterror while loading shared libraries: libcppunit-1.13.so.0: cannot open shared object file: No such file or directoryQubes OS - Update a Template Kernel
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“--with-x=yes (default) and X11 headers/libs are not available”
Announcing the arrival of Valued Associate #679: Cesar Manara
Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern)
2019 Community Moderator Election Results
Why I closed the “Why is Kali so hard” questionError in installing R package headers/libs are not availableAlsa - how can i tell my default audio output is card 2 and device 0, not hdmi?install and run new version of RWhy apache binaries built with gcc 64-bits are mixed 32 and 64 bits?Compile static tmux with libutempter supportFresh build and install of bison with custom --prefix is not looking for its data where I expecterror while loading shared libraries: libcppunit-1.13.so.0: cannot open shared object file: No such file or directoryQubes OS - Update a Template Kernel
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3
I am trying to install R in our cluster (the cluster is Red Hat Enterprise Linux 6), where I don't have root access. I tried:
$wget http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz
$ tar xvf R-3.1.1.tar.gz
$ cd R-3.1.1
$ ./configure --prefix=/home/Kryo/R-3.1.1
But I am getting an error:
configure: error: --with-x=yes (default) and X11 headers/libs are not available
compiling configure r
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
|
show 1 more comment
3
I am trying to install R in our cluster (the cluster is Red Hat Enterprise Linux 6), where I don't have root access. I tried:
$wget http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz
$ tar xvf R-3.1.1.tar.gz
$ cd R-3.1.1
$ ./configure --prefix=/home/Kryo/R-3.1.1
But I am getting an error:
configure: error: --with-x=yes (default) and X11 headers/libs are not available
compiling configure r
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
7
The error message looks pretty clear. Either install X11 development files or use--without-x.
– jordanm
Jul 13 '15 at 16:13
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
1
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
1
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25
|
show 1 more comment
3
3
3
1
I am trying to install R in our cluster (the cluster is Red Hat Enterprise Linux 6), where I don't have root access. I tried:
$wget http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz
$ tar xvf R-3.1.1.tar.gz
$ cd R-3.1.1
$ ./configure --prefix=/home/Kryo/R-3.1.1
But I am getting an error:
configure: error: --with-x=yes (default) and X11 headers/libs are not available
compiling configure r
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
I am trying to install R in our cluster (the cluster is Red Hat Enterprise Linux 6), where I don't have root access. I tried:
$wget http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz
$ tar xvf R-3.1.1.tar.gz
$ cd R-3.1.1
$ ./configure --prefix=/home/Kryo/R-3.1.1
But I am getting an error:
configure: error: --with-x=yes (default) and X11 headers/libs are not available
compiling configure r
compiling configure r
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
edited Oct 27 '18 at 21:12
Jeff Schaller♦
45k1164147
45k1164147
asked Jul 13 '15 at 16:11
KryoKryo
12114
asked Jul 13 '15 at 16:11
KryoKryo
12114
asked Jul 13 '15 at 16:11
KryoKryo
12114
12114
7
The error message looks pretty clear. Either install X11 development files or use--without-x.
– jordanm
Jul 13 '15 at 16:13
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
1
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
1
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25
|
show 1 more comment
7
The error message looks pretty clear. Either install X11 development files or use--without-x.
– jordanm
Jul 13 '15 at 16:13
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
1
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
1
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25
7
7
The error message looks pretty clear. Either install X11 development files or use
--without-x.– jordanm
Jul 13 '15 at 16:13
The error message looks pretty clear. Either install X11 development files or use
--without-x.– jordanm
Jul 13 '15 at 16:13
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
1
1
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
1
1
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25
|
show 1 more comment
1 Answer
1
active
oldest
votes
6
According to this thread, you should just install libXt-devel package and you should be fine.
But perhaps you also should install xorg-x11-server-devel and libX11-devel?
That would be:
yum install xorg-x11-server-devel libX11-devel libXt-devel
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
add a comment |
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According to this thread, you should just install libXt-devel package and you should be fine.
But perhaps you also should install xorg-x11-server-devel and libX11-devel?
That would be:
yum install xorg-x11-server-devel libX11-devel libXt-devel
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
add a comment |
6
According to this thread, you should just install libXt-devel package and you should be fine.
But perhaps you also should install xorg-x11-server-devel and libX11-devel?
That would be:
yum install xorg-x11-server-devel libX11-devel libXt-devel
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
add a comment |
6
6
6
According to this thread, you should just install libXt-devel package and you should be fine.
But perhaps you also should install xorg-x11-server-devel and libX11-devel?
That would be:
yum install xorg-x11-server-devel libX11-devel libXt-devel
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
According to this thread, you should just install libXt-devel package and you should be fine.
But perhaps you also should install xorg-x11-server-devel and libX11-devel?
That would be:
yum install xorg-x11-server-devel libX11-devel libXt-devel
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
answered Feb 21 '17 at 12:51
Anthony O.Anthony O.
34538
34538
add a comment |
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-compiling, configure, r
7
The error message looks pretty clear. Either install X11 development files or use
--without-x.– jordanm
Jul 13 '15 at 16:13
Did you consider asking your sysadmin? Can't you use R on your own Linux workstation or laptop? A supercomputer is generally supposed to crunch numbers in efficient, compiled, code. You could prototype your algorithms on your laptop, then, if you need the power of your supercomputer, rewrite in C++ or Fortran (or even OpenCL) the critical parts of it. HPC are generally not bought to run interpreted code!
– Basile Starynkevitch
Jul 13 '15 at 16:22
@BasileStarynkevitch. I am working on analysing next generation sequencing data which needs a huge computational space. Impossible to work in worstation or laptop.
– Kryo
Jul 13 '15 at 16:28
1
Then I believe that R is not for this.... Supercomputers are costly enough (w.r.t. to qualified human labor cost) to be programmed in efficient compiled languages (e.g. C++, Fortran, OpenCL, perhaps Ocaml or Go or Common Lisp or Scala....). So use R for prototyping only (or for pre- or post- processing, which could run on a desktop), especially if you need huge computational power.
– Basile Starynkevitch
Jul 13 '15 at 16:29
1
@jordanm please post answers as answers (or, alternatively, if you think the question should be closed, vote to close).
– derobert
Jul 13 '15 at 17:25